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Missing character: There is no ۹ in font [lmmono10-regular]! Missing character: There is no ۸ in font [lmmono10-regular]! Missing character: There is no ۶ in font [lmmono10-regular]! Missing character: There is no ۸ in font [lmmono10-regular]! Missing character: There is no ۲ in font [lmmono10-regular]! Missing character: There is no ۰ in font [lmmono10-regular]! Missing character: There is no ۰ in font [lmmono10-regular]! Missing character: There is no ۷ in font [lmmono10-regular]! Missing character: There is no ۰ in font [lmmono10-regular]! Missing character: There is no ۰ in font [lmmono10-regular]! Missing character: There is no ۶ in font [lmmono10-regular]! Missing character: There is no ۳ in font [lmmono10-regular]! Missing character: There is no ۵ in font [lmmono10-regular]! Missing character: There is no ۱ in font [lmmono10-regular]! Missing character: There is no ۱ in font [lmmono10-regular]! Missing character: There is no ۰ in font [lmmono10-regular]! Missing character: There is no ت in font Euclid/AAT:mapping=tex-text;! Underfull \hbox (badness 2495) in paragraph at lines 44--44 [][][]\EU1/Euclid(0)/m/n/10.95 J Opsomer, G Claeskens, M Ranalli, and G Kauerma nn. Non- [] Missing character: There is no ۲ in font [lmmono10-regular]! Missing character: There is no ۶ in font [lmmono10-regular]! Missing character: There is no ۸ in font [lmmono10-regular]! Missing character: There is no ۰ in font [lmmono10-regular]! Missing character: There is no ۸ in font [lmmono10-regular]! Missing character: There is no ۳ in font [lmmono10-regular]! Missing character: There is no ۹ in font [lmmono10-regular]! Missing character: There is no ت in font Euclid/AAT:mapping=tex-text;! Missing character: There is no ت in font Euclid/AAT:mapping=tex-text;! ) [12 ] No file "thesis proposal".ind. LaTeX Font Info: Font shape `EU1/Euclid(0)/m/n' will be (Font) scaled to size 15.84007pt on input line 229. LaTeX Font Info: Font shape `EU1/Euclid(0)/bx/n' will be (Font) scaled to size 15.84007pt on input line 229. LaTeX Font Info: Font shape `EU1/Euclid(0)/bx/n' will be (Font) scaled to size 12.04506pt on input line 229. [13] File: logo.pdf Graphic file (type QTm) LaTeX Font Info: Font shape `EU1/Euclid(0)/m/n' will be (Font) scaled to size 13.20007pt on input line 233. LaTeX Font Info: Font shape `EU1/Euclid(0)/bx/n' will be (Font) scaled to size 13.20007pt on input line 233. [14] Package atveryend Info: Empty hook `AfterLastShipout' on input line 235. (./thesis proposal.aux (./Chapters/Chapter01.aux) (./Chapters/appendix1.aux)) Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 235. ! Use of \pdfmdfivesum doesn't match its definition. \pdf@filemdfivesum {->\pdfmdfivesum file{ l.235 \end{document} If you say, e.g., `\def\a1{...}', then you must always put `1' after `\a', since control sequence names are made up of letters only. The macro here has not been followed by the required stuff, so I'm ignoring it. ! Extra }, or forgotten \endgroup. \AtVeryEnd@AtVeryEndDocumentHook ...jobname .out}} \ifx \x \ReFiCh@Separator ... l.235 \end{document} I've deleted a group-closing symbol because it seems to be spurious, as in `$x}$'. But perhaps the } is legitimate and you forgot something else, as in `\hbox{$x}'. In such cases the way to recover is to insert both the forgotten and the deleted material, e.g., by typing `I$}'. Package rerunfilecheck Info: File `"thesis proposal".out' has not changed. (rerunfilecheck) Checksum: "thesis proposal".out. ! Use of \pdfmdfivesum doesn't match its definition. \pdf@filemdfivesum {->\pdfmdfivesum file{ l.235 \end{document} If you say, e.g., `\def\a1{...}', then you must always put `1' after `\a', since control sequence names are made up of letters only. The macro here has not been followed by the required stuff, so I'm ignoring it. ! Extra }, or forgotten \endgroup. \AtVeryEnd@AtVeryEndDocumentHook ...jobname .brf}} \ifx \x \ReFiCh@Separator ... l.235 \end{document} I've deleted a group-closing symbol because it seems to be spurious, as in `$x}$'. But perhaps the } is legitimate and you forgot something else, as in `\hbox{$x}'. In such cases the way to recover is to insert both the forgotten and the deleted material, e.g., by typing `I$}'. Package rerunfilecheck Info: File `"thesis proposal".brf' has not changed. (rerunfilecheck) Checksum: "thesis proposal".brf. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (\end occurred inside a group at level 2) ### simple group (level 2) entered at line 218 ({) ### simple group (level 1) entered at line 215 ({) ### bottom level Here is how much of TeX's memory you used: 13958 strings out of 494665 215401 string characters out of 3163742 407842 words of memory out of 3000000 16766 multiletter control sequences out of 15000+200000 14437 words of font info for 119 fonts, out of 3000000 for 9000 669 hyphenation exceptions out of 8191 42i,35n,61p,894b,506s stack positions out of 5000i,500n,10000p,200000b,50000s Output written on thesis proposal.pdf (20 pages).